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Protein Array Screening

General Information

imaGenes Protein Arrays contain the largest collection of arrayed proteins, which are derived from several human tissues. Each Protein Array consists of up to 27,648 E. coli-expressed proteins, which are printed in duplicate on a PVDF membrane. Clones for the production of Protein Arrays are sequenced and have undergone a stringent in-frame analysis. imaGenes Protein Arrays are suitable for Serum Sceening and Antibody Epitope Mapping.

Applications

  • Serum Sceening: Arrayed proteins are hybridised with (a minimum of 100 µl of customer-provided) human patient sera, to find auto-antibodies against targets related to disease, in e.g. autoimmune diseases.

  • Antibody Epitope Mapping: Arrayed proteins are incubated with monoclonal or purified antibodies (provided by customer). Positive signals can be used to determine which epitope is recognized by the antibody. This approach is valuable for all clinicians and researchers who would like to work with antibodies that are not fully characterized, especially for developing new antibodies for diagnostics or treatments.


Screening

Patient serum (or plasma) or monoclonal or purified antibody, respectively, is incubated with the desired imaGenes Protein Array. Recognized proteins may be visualized with an ECF-labeled secondary antibody. Customer may either perform experiments on his or her own or employ imaGenes for scanning of proteins and analysis of results. imaGenes recommends to perform at least one replicate of the experiment. Identified proteins and corresponding clones can be provided as annotated clone lists, including EST sequence information, gene symbol, EnsEMBL-gene ID, UniGene cluster ID, protein structure information (if available), etc. Protein Array analysis images and all quality-control results are electronically documented.



Fig.1:Serum Sceening using imaGenes Protein Arrays. The image shows approx. 150 signals (double spots). The position of these proteins is determined and correlated with cDNA sequences encoding for the proteins on the array.

Fig.1: Antibody Epitope Mapping using imaGenes Protein Arrays. The PVDF membrane containing recombinant proteins is overlayed with a monoclonal antibody or a serum from rat or rabbit. In this example a monoclonal antibody detected three clones.
 
 

References

For detailed information about the generation, characterization and application of the Protein Expression Libraries please click here.
The generation of Protein Arrays is based on a technology licensed from Prot@gen AG.

1. G. Grelle, S. Kostka, A. Otto, B. Kersten, K. Genser, E. Müller, S. Wälter, A. Böddrich, U. Stelzl, C. Hänig,  R. Volkmer-Engert, C. Landgraf, S. Alberti, J. Höhfeld, M. Strödicke, and E. Wanker:
Identification of VCP/p97, CHIP and amphiphysin II interaction partners using membrane-based human proteome arrays.
MCP (2005) 10.1074/mcp.M500198−MCP200
2. K. de Graaf, P. Hekerman, O. Spelten, A. Herrmann, L. C. Packman, K. Bussow. G. Muller-Newen, W. Becker (2004) :
Characterization of cyclin L2, a novel cyclin with an arginine/serine-rich domain: phosphorylation by DYRK1A and colocalization with splicing factors.
J Biol Chem. 279(6):4612−24
3. K. Büssow, C. Quedenau, V. Sievert, J. Tischler, C. Scheich, H. Seitz, B. Hieke, F.H. Niesen, F. Gotz, U. Harttig, H. Lehrach: A catalog of human cDNA expression clones and its application to structural genomics.
Genome Biol. 2004 Aug; 5(9):R71
4. U. Radelof, C.Hüls, B. Korn, J. Maurer: Proteinarrays und rekombinante Proteine für die Proteinanalyse.
Laborwelt 2004. 5: p.35
5. C. Maercker: Protein-Chips in der Genomforschung.
Laborwelt 2004. 4: p.12−15
6. J. Lee and M.T. Bedford: PABP1 identified as an arginine methyltransferase substrate using high-density protein arrays.
EMBO Reports 2002. 3(3): p.268−73
7. U. Mahlknecht, O.G. Ottmann, and D. Hoelzer: Far-Western based protein-protein interaction screening of high-density protein filter arrays.
Journal of Biotechnology 2001. 88(2): p. 89−94
8. K. Büssow, E. Nordhoff, C. Lübbert, H. Lehrach, and G. Walter: A human cDNA library for high-throughput protein expression screening.
Genomics 2000.65(1): 1−8
9. L. J. Holt, K. Büssow, G. Walter, and I. M. Tomlinson: By-passing selection: direct screening for antibody−antigen interactions using protein arrays.
Nucleic Acids Research 2000. 28(15): p. E72
10. K. Büssow, D. Cahill, W. Nietfeld, D. Bancroft, E. Scherzinger, H. Lehrach, and G. Walter: A method for global protein expression and antibody screening on high-density filters of an arrayed cDNA library.
Nucleic Acids Research 1998. 26(21): p. 5007−5008



 
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  Contact


Tel: +49 30 9489 2444


Tel: +49 30 9489 2462

Fax: +49 30 9489 2449



  Reference Customers

Dr. Derek Murphey
Associate Director
Centre for Human Proteomics
Royal College of Surgeons in Ireland
123 St Stephen’s Green
Dublin 2
Ireland
Tel.: +353 1 402 8518
Fax: +353 1 402 8514
Email
Homepage

Dr. Mark T. Bedford
University of Texas
M.D. A. Cancer Center, Dept.of Carcinogenesis
Smithville, USA
Email
Homepage


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